EMBOSS Developers Guide: Bioinformatics Programming
Contents:
Prompting Behaviour and Default Values 4. ACD File Sections 4. Sections in an ACD File 4. Standard File Sections sections. Application Definition Format 4. Application Keywords File keywords. Application Group Names File groups. Data Definition Format 4. Parameter Naming Conventions 4. Groupings of ACD Datatypes 4. Simple ACD Datatypes 4.
Input ACD Datatypes 4. Output ACD Datatypes 4. Selection ACD Datatypes 4. Graphics ACD Datatypes 4. Types of Data Attributes 4. Help Information and Documentation 4. Hints for GUIs 4. Attributes for Datatype-associated Qualifiers 4. Introduction to Calculated Attributes 4. Retrieving Values of Calculated Attributes 4. Sequence Calculated Attributes 4. Feature Calculated Attributes 4. Types of Operation 4.
General Operation Syntax 4. Calculations and Tests 4. Tests for Equality 4. Unary Conditional Statements 4. Use of Variables 4. Controlling the Prompt 4. Maxima and Minima 4. Setting the Prompts 4. Prompting for boolean Values 4. Using the Utilities 4. Description of Utilities 4. Use of entrails 5.
Fundamental C Datatypes 5. Storage Class and Linkage 5. C Pointers Primer 5. Pointers to Pointers 5. Objects C Data Structures 5. Introduction to Memory Management 5. General memory management macros 5. Object memory management macros 5. Object constructor and destructor functions 5. Failsafe object construction 5. General Memory Management 5. Arrays of Fundamental C-type Datatypes 5. Object Memory Management 5. Programming with Objects 5.
AjPInt Construction and Destruction 5. AjPInt2d Construction and Destruction 5.
EMBOSS Documentation for Developers
Programming with AJAX 6. Handling ACD Files 6. Retrieving ACD Values 6. ACD Data Definition 6. ACD File Handling 6. Object Memory Management 6. Default Object Construction 6. Default Object Destruction 6. Alternative Object Construction and Loading 6. Getting Range Object Elements 6. Querying Range Object Properties 6. Sequence Manipulation Functions 6.
String Manipulation Functions 6. Input String Retrieval 6. String Object Memory Management 6. String Referencing and Dereferencing Functions 6.
String Assignment Functions 6. String Combination Functions 6.
Bioinformatics Programming
String append functions 6. String Join Functions 6. String Insert Functions 6. String Paste Functions 6. String Cut Functions 6. Simple cut functions 6. Removing characters from a string 6. Retaining characters in a string 6. String trimming functions 6. String Substitution Functions 6. String Query Functions 6. String Properties and Character Retrieval Functions 6.
String Conversion Functions 6. String Formatting Functions 6. String Comparison Functions 6. String Search Functions 6. String Parsing Functions 6. C-type string constructor and destructor functions 6. C-type string comparison functions 6. Handling String Formatting 6. Handling Sequence Patterns 6. Input Pattern Retrieval 6. Pattern Object Memory Management 6. Getting Elements of Objects 6.
Setting Elements of Objects 6. Input Sequence Retrieval 6. Output Sequence Stream Retrieval 6. Memory and File Management 6. Sequence Object Memory Management 6. Getting and Setting Elements 6. Setting Single Values 6. Other Assignment Functions 6. Getting Single Values 6. Testing Sequence Properties 6. Calculating Sequence Properties 6. Sequence String Functions 6. Sequence Type Validation 6. Handling Sequence Translation 6. Conversion of Base and Amino Acid Codes 6.
About this book
Sequence or Menu Selection Retrieval 6. Translation Object Memory Management 6. Input Feature Retrieval 6.
Programming with Objects 5. The Source Code 1. Retrieving Properties of Graphs 6. Alternative Object Construction and Loading 6. Controlling Debugging Behaviour 3. ACD File Sections 9.
Output Feature Retrieval 6. Output Feature Table Functions 6.
Retrieving Elements of a Feature Object 6. Retrieving Elements of a Feature Table Object 6. Setting Elements of a Feature Object 6. Setting Elements of a Feature Table Object 6. Functions for Handling Feature Tags 6. Querying Properties of Features 6. Querying Properties of Feature Tables 6. Processing Feature Tables 6. Handling Comparison Matrices 6. Input Comparison Matrix Retrieval 6. Output Comparison Matrix Retrieval 6. Matrix Object Memory Management 6. Functions for Retrieving the Properties of a Matrix. Functions for Indexing a Matrix 6. Input Alignment Retrieval 6.
Output Alignment Retrieval 6. Alignment Object Memory Management 6. Retrieving Elements of an Alignment Object 6. Setting Elements of an Alignment Object 6. Handling Phylogenetic Data 6. Phylogenetic Data Retrieval 6. Phylogenetic Object Memory Management 6. Reading Phylogenetic Data from File 6. Getting Elements of Phylogenetic Objects 6.
Handling Codon Usage Tables 6. Input Codon Usage Table Retrieval 6. Output Codon Usage Table Retrieval 6. Reading and Writing Codon Usage Tables 6. Reading a codon usage table 6. Writing a codon usage table 6. Clearing a codon usage table 6. Input File Retrieval 6. Output File Retrieval 6. File and Directory Object Memory Management 6.
Reading from File 6. Writing to Files 6. Querying Properties of Files 6.
Querying and Manipulating File and Directory Names 6. Handling Application Reports 6. Report Object Memory Management 6.
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Preparing a Report 6. Example Report Application 6. C Source Code 6. Report File Management 6. Setting Elements of a Report Object 6. Getting Elements of a Report Object 6. Debugging Report Objects 6. Types of List 6. List Object Memory Management 6. Managing Node Data 6. List Node Retrieval 6. List iterator construction 6. List iterator destruction 6.
Querying a List 6. Adding nodes to a List 6. Removing nodes from a list 6. Reversing the order of nodes in a list 6. String comparison functions 6. List Node Functions 6. Input Array Retrieval 6. Names of Functions 6. Array Object Memory Management 6. Getting and Setting Array Elements 6. Retrieving a C-type Array 6. Table Object Memory Management 6.
Table Hash Functions 6. Table Comparison Functions 6. View online Borrow Buy Freely available Show 0 more links With access conditions Cambridge Books Online at http: Other links Ebook Library at http: Set up My libraries How do I set up "My libraries"? These 5 locations in All: Available for document delivery. Book English La Trobe University.
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